谷子MYB-CC基因家族的鉴定与表达分析

李明明,晋敏姗,胡海斌,王 浩,于港华,邢国芳

激光生物学报 ›› 2021, Vol. 30 ›› Issue (3) : 259-269.

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激光生物学报 ›› 2021, Vol. 30 ›› Issue (3) : 259-269.
研究报告

谷子MYB-CC基因家族的鉴定与表达分析

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Identification and Expression Analysis of MYB-CC Gene Family in Foxtail Millet

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摘要

摘 要: MYB-CC基因家族是由MYB-DNA结合域和CC(coiled-coil)结构域组成的,其中CC结构域能通过折叠参与蛋白质之间的相互作用,是一个二聚体结构域。这类MYB-CC转录因子是植物特有的,除磷饥饿响应蛋白1(PHR1)外,拟南芥中另外14个蛋白也同样具有这两个结构域。部分MYB-CC基因已经被证明可调控植物中磷酸盐吸收和控制磷饥饿反应。为了探索谷子MYB-CC基因家族的特征和功能,本文通过生物信息学分析来解析谷子MYB-CC基因家族的特征,分析其表达模式及谷子与水稻、玉米基因组中的MYB-CC基因家族的共线性、选择压力。结果表明:通过基因在谷子染色体上的定位情况,共筛选到谷子MYB-CC基因家族基因18个,分布在7条染色体上;基序分析发现存在1个相对保守的基序motif 1;顺式作用元件分析发现,参与防御和胁迫响应相关的MYB-CC基因有6个;基因表达模式分析结果显示,SiMYB-CC6在根和茎秆中特异性表达。该研究结果可为谷子MYB-CC基因家族的进一步研究提供一定的参考依据。
关键词:谷子;MYB-CC基因家族;生物信息学;基因表达;低磷胁迫
中图分类号:S515      文献标志码:ADOI:10.3969/j.issn.1007-7146.2021.03.008

Abstract

Abstract: MYB-CC gene family is transcription factor containing MYB-DNA binding domain and CC (coiled-coil) domain. The CC domain is a dimer domain that can participate in the interaction with proteins through structure folding. This is unique in plants that contain this domain of MYB-CC transcription factor. In addition to phosphate starvation response1 (PHR1), another 14 proteins in Arabidopsis thaliana also have these two domains. Some MYB-CC genes have shown to regulate phosphate uptake and control phosphate starvation in plants. In order to explore the characteristics and functions of MYB-CC gene family in foxtail millet, the characteristics and expression patterns of MYB-CC gene family in foxtail millet were analyzed by bioinformatics analysis. Finally, the collinearity and selection pressure of MYB-CC gene family in foxtail millet, rice and maize genomes were analyzed. The results showed that 18 genes of MYB-CC family were found on 7 chromosomes; a relatively conservative motif 1 was found in the motif analysis; cis-elements analysis showed that there were 6 MYB-CC genes involved in defense and stress response. The results of gene expression analysis showed that SiMYB-CC6 was specifically expressed in roots and stems. The results can provide reference for the further study of MYB-CC genes family in foxtail millet.
Key words: foxtail millet; MYB-CC gene family; bioinformatics; gene expression; low phosphorus stress
(Acta Laser Biology Sinica, 2021, 30(3): 259-269)

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李明明,晋敏姗,胡海斌,王 浩,于港华,邢国芳. 谷子MYB-CC基因家族的鉴定与表达分析[J]. 激光生物学报. 2021, 30(3): 259-269
LI Mingming, JIN Minshan, HU Haibin, WANG Hao, YU Ganghua, XING Guofang. Identification and Expression Analysis of MYB-CC Gene Family in Foxtail Millet[J]. Acta Laser Biology Sinica. 2021, 30(3): 259-269

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